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Publications - Jan Schier


Books and chapters (2)
1. * Jan Schier, Bohumil Kovář: Simple Tool for Semi-automated Evaluation of Yeast Colony Images. Biomedical Engineering Systems and Technologies, 4th International Joint Conference, BIOSTEC 2011, Revised Selected Papers, 110-125. Springer, Berlin 2013.   Download
2. * J. Gabriel, Jan Schier, S. Van Huffel, E. Conchon, C. Correia, A. Fred, H. Gamboa: Biomedical Engineering Systems and Technologies. Communications in Computer and Information Science 357. Springer, Berlin Heidelberg 2013.   Download

Journal articles (9)
1. * Filip Šroubek, Michal Bartoš, Jan Schier, Zuzana Bílková, Barbara Zitová, J. Vydra, I. Macová, J. Daneš, L. Lambert: A computer-assisted system for handheld whole-breast ultrasonography. International Journal of Computer Assisted Radiology and Surgery 14:3 (2019), 509-516. Springer.   Download
2. * D. Habart, J. Švihlík, Jan Schier, M. Cahová, P. Girman, K. Zacharovová, Z. Berková, J. Kříž, E. Fabryová, L. Kosinová, Z. Papáčková, J. Kybic, F. Saudek: Automated Analysis of Microscopic Images of Isolated Pancreatic Islets. Cell Transplantation 25:12 (2016), 2145-2156. Sage.   Download
3. * Monika Baxa, Marian Hruška-Plocháň, Štefan Juhás, Petr Vodička, Antonín Pavlok, Jana Juhásová, A. Miyanohara, T. Nejime, Jiří Klíma, Monika Mačáková, S. Marsala, A. Weiss, S. Kubíčková, P. Musilová, R. Vrtel, E. M. Sontag, L.M. Thompson, Jan Schier, H. Hansíková, D. S. Howland, E. Cattaneo, M. DiFiglia, M. Marsala, Jan Motlík: A transgenic minipig model of Hungtington´s disease. Journal of Huntington´s Disease 2:1 (2013), 47-68. IOS Press.
4. * Milan Tichý, Jan Schier, D. Gregg: GSFAP Adaptive Filtering Using Log Arithmetic for Resource-Constrained Embedded Systems. ACM Transactions on Embedded Computing Systems 9:3 (2010), 1-31.   Download
5. * P. Šůcha, Z. Hanzálek, Antonín Heřmánek, Jan Schier: Scheduling of Iterative Algorithms with Matrix Operations for Efficient FPGA Design—Implementation of Finite Interval Constant Modulus Algorithm. Journal of Vlsi Signal Processing Systems for Signal Image and Video Technology 46:1 (2007), 35-53.   Download
6. * Jiří Kadlec, Jan Schier: Analysis of a normalized QR filter using Bayesian description of propagated data. International Journal of Adaptive Control and Signal Processing 13:6 (1999), 487-505. Wiley.
7. * Jan Schier: Estimation of transport delay using parallel recursive modified Gram-Schmidt algorithm. International Journal of Adaptive Control and Signal Processing 11:5 (1997), 431-442. Wiley.   Download
8. * Jan Schier: Inverse updated systolic RLS algorithm with regularized exponential forgetting. Kybernetika 32:3 (1996), 209-234. Ústav teorie informace a automatizace AV ČR, v. v. i..   Download
9. * Jan Schier: A systolic algorithm for block-regularized RLS identification. Integration, the VLSI Journal 20, 85-100. Elsevier.   Download

Conference papers (42)
1. * Zuzana Bílková, Michal Bartoš, Jan Schier, Filip Šroubek, Barbara Zitová, J. Vydra, J. Daneš: Evaluating Spatial Coverage of Breast Examination with Free-hand Ultrasound Transducer. BISTEC 2017 10th International Joint Conference on Biomedical Engineering Systems and Technologies, 128-133. SCITEPRESS Science and Technology Publications, Lda., Portugal 2017.   Download
2. * Jan Schier, Bohumil Kovář, E. Kočárek: Automated Detection of Interphase and Metaphase Nuclei in the FISH Images. BIOINFORMATICS 2012, Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, 347-350. SciTePress - Science and Technology Publications, Algarve 2012.
3. * Jan Schier, Bohumil Kovář: Automated counting of yeast colonies using the Fast Radial Transform algorithm. BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies, 22-27. SciTePress, Lisabon 2011.   Download
4. * Jan Schier, Bohumil Kovář, E. Kočárek, Michal Kuneš: Image Processing for Automated Analysis of the Fluorescence In-Situ Hybridization (FISH) Microscopic Images. Convergence and Hybrid Information Technology, 622-633. Springer-Verlag, Berlin Heidelberg 2011.   Download
5. * Jan Schier, Bohumil Kovář: A semi-automatic software tool for batch processing of yeast colony images. Proceedings of the Eighth IASTED International Conference on Signal Processing, Pattern Recognition, and Applications, 206-212. The International Association of Science and Technology for Development (IASTED), Innsbruck 2011.   Download
6. * Jan Schier, Bohumil Kovář: Using Matlab in quantitative analysis of yeast growth. Technical Computing Prague 2009, 1-9. Humusoft, s.r.o, Praha 2009.   Download
7. * Bohumil Kovář, Jan Kloub, Jan Schier, Antonín Heřmánek: Rapid Prototyping Platform For Reconfigurable Image Processing. Technical computing Prague 2008. 16th annual conference proceedings, 62-62. Humusoft, Praha 2008.   Download
8. * Bohumil Kovář, Jan Schier, P. Zemčík, A. Herout, J. Zuzaňák: Simulink Model Converter for Embedded Video Accelerator. Technical Computing Prague 2007, 79-79. Humusoft, Praha 2007.
9. * Jan Schier, Bohumil Kovář, J. Zuzaňák: Configuration System for a DSP/FPGA-Based Embedded Accelerator. Digital Technologies 2007 Proceedings, 1-4. Slovenská elektrotechnická spoločnosť, Žilina 2007.
10. * Milan Tichý, Jan Schier, D. Gregg: Efficient Floating-Point Implementation of High-Order (N)LMS Adaptive Filters in FPGA. Reconfigurable Computing: Architecures and Applications. Proceedings of the Second International Workshop ARC, 311-316. Springer, Berlin 2006.
11. * Milan Tichý, Jan Schier, D. Gregg: FPGA Implementation of Adaptive Filters based on GSFAP using Log Arithmetic. Proceedings of The 2006 IEEE Workshop on Signal Processing Systems Design and Implementation, 342-347. IEEE Signal Processing Society, Calgary 2006.
12. * Jan Schier, Bohumil Kovář: A DSP/FPGA-based accelerator for video. Digital Technologies 2006, 1-5. Slovenská elektrotechnická spoločnosť, Žilina 2006.
13. * Bohumil Kovář, Jan Schier, P. Zemčík, A. Herout, V. Beran: Simulink as Tool for Prototyping Reconfigurable Image Processing Applications. Technical computing Prague 2006. 14th annual conference proceedings, 52-57. Humusoft, Prague 2006.
14. * P. Šůcha, Z. Hanzálek, Antonín Heřmánek, Jan Schier: Efficient FPGA Implementation of Equalizer for Finite Interval Constant Modulus Algorithm. IEEE Symposium on Industrial Embedded Systems - IES 2006, Proceedings of, 1-10. CNRS-ENS, Lyon 2006.
15. * P. Zemčík, A. Herout, V. Beran, A. Fučík, Jan Schier: Reconfigurable image processing architecture. ICGST International Conference on Graphics, Vision and Image Processing. GVIP-05, 1-6. ICGST, Káhira 2005.
16. * Jan Schier, Bohumil Kovář, P. Zemčík, A. Herout, V. Beran: Reconfigurable image processing architecture with simulink prototyping support. Technical Computing Prague 2005. 13th Annual Conference Proceeding, 1-4. VŠCHT, Praha 2005.
17. * Antonín Heřmánek, Jan Schier: FPGA implementation of Finite Interval CMA. Proceedings of the first annual IEEE BENELUX/DSP Valley Signal Processing Symposium. SPS-DARTS 2005, 97-100. IEEE, Antverpy 2005.
18. * Antonín Heřmánek, Jan Schier, P. Šůcha, Z. Hanzálek: Optimization of finite interval CMA implementation for FPGA. Proceedings of the IEEE Workshop on Signal Processing Systems. SiPS 2005, 1-6. IEEE, Athens 2005.
19. * Antonín Heřmánek, Jan Schier, P. Regalia: Architecture design for FPGA implementation of finite interval CMA. Proceedings of the 12th European Signal Processing Conference, 1-4. University of Technology, Vienna 2004.
20. * Jan Schier, Antonín Heřmánek: FPGA implementation of recursive QR update using LNS arithmetic. Proceedings of the 4th IEEE Benelux Signal Processing Symposium, 1-4. Technical University, Delft 2004.
21. * Jan Schier, Antonín Heřmánek: Using logarithmic arithmetic to implement the Recursive Least Squares (QR) algorithm in FPGA. Field-Programmable Logic and Applications. 14th International Conference FPL 2004. Proceedings, 1149-1151. Springer, Berlin 2004.
22. * Jan Schier, Jiří Kadlec: Using logarithmic arithmetic for FPGA implementation of the Givens rotations. Proceedings of the Sixth Baiona Workshop on Signal Processing in Communications, 199-204. Universidade de Vigo, Vigo 2003.
23. * Miroslav Líčko, Jan Schier, Milan Tichý, M. Kühl: MATLAB/Simulink based methodology for rapid-FPGA-prototyping. Lecture Notes in Computer Science. 2778. Field-Programmable Logic and Applications. Proceedings of the 13th International Conference, 984-987. Springer, Berlin 2003.
24. * Zdeněk Pohl, Jan Schier, Miroslav Líčko, Antonín Heřmánek, Milan Tichý: Logarithmic arithmetic for real data types and support for Matlab/Simulink based rapid-FPGA-prototyping. Proceedings of the International Parallel and Distributed Processing Symposium. IPDPS 2003, 1-6. IEEE Computer Society Press, Los Alamitos 2003.
25. * Miroslav Líčko, Jan Schier: FPGA Prototyping Using Extensions to MATLAB/Simulink. UK ACM SIGDA 3rd Workshop on Electronic Design Automation, 1-3. University of Southampton, Southampton 2003.
26. * Jan Schier: Using the System-C library for bit-true simulations in MATLAB. MATLAB 2002. Sborník příspěvků 10. ročníku konference, 497-504. VŠCHT, Praha 2002.
27. * Jan Schier, Jiří Kadlec, M. Moonen: Implementing advanced equalization algorithms using Simulink with embedded Alpha AXP coprocessor. Fifth IMA International Conference on Mathematics in Signal Processing, 11-14. University of Warwick, Warwick 2000.
28. * Jan Schier: Fast fixed-point algorithm for estimation of the system time lag. Preprints of the 3rd European IEEE Workshop on Computer-Intensive Methods in Control and Data Processing, 151-154. ÚTIA AV ČR, Praha 1998.
29. * Jan Schier, A. J. C. van Gemund, G. L. Reijns: Real-time signal processing for an obstacle warning radar. Signal Processing Symposium, 167-170. IEEE, Leuven 1998.
30. * Jiří Kadlec, Jan Schier: Rapid prototyping of adaptive control algorithms on parallel multiprocessors. Signal Processing Symposium, 115-118. IEEE, Leuven 1998.   Download
31. * Jan Schier, Jiří Kadlec, Josef Böhm: Robust adaptive controller with fine grain parallelism. Preprints of the IFAC Workshop on Adaptive Systems in Control and Signal Processing, 436-441. IFAC, Glasgow 1998.   Download
32. * P. J. F. Swart, Jan Schier, A. J. C. van Gemund, W. F van der Zwan, J. P. Karelse, G. L. Reijns, P. van Genderen, L. P. Ligthart, H. T. Steenstra: The COLORADO multistatic FMCW radar system. European Microwave. Proceedings, 449-454. Europeam Microwave Association, London 1998.
33. * Jan Schier, H. J. Agterkamp, A. J. C. van Gemund, G. L. Reijns, H. X. Lin: Object tracking and tracing for multi-static FM-CW radar - incremental approach. Computer-Intensive Methods in Control and Signal Processing. Preprints of the 2nd European IEEE Workshop CMP'96, 151-154. ÚTIA AV ČR, Praha 1996.
34. * Jan Schier: The systolic regularized linear quadratic controller. Computer-Intensive Methods in Control and Signal Processing, 133-140. ÚTIA AV ČR, Praha 1994.
35. * F. M. F. Gaston, Jiří Kadlec, Jan Schier: The block regularized linear quadratic optimal controller. IEE International Conference on Control '94, 1254-1259. IEE, London 1994.   Download
36. * Jan Schier: A systolic algorithm for block-regularized RLS identification. Algorithms and Parallel VLSI Architectures III, 49-60. Elsevier, Amsterdam 1994.
37. * Jan Schier: Systolic algorithms for adaptive control, implementation in the Matlab environment. Distributed Control. Proceedings, 103-113. ČVUT FEL, Praha 1994.
38. * Lenka Kulhavá, Jan Schier, Miroslav Kárný: Progress in Transputer Computing Technology. ÚTIA AV ČR, Praha 1993.
39. * Jan Schier: Fast quality evaluation in preliminary tuning of adaptive controller. Progress in Transputer Computing Technology, 33-44. ÚTIA AV ČR, Praha 1993.
40. * Petr Nedoma, Jan Schier: CAD systémů řízení s transputery. TRANSPUTER CS'92. Zborník prednášok, -. Ústav počítačových systémov, Bratislava 1992.
41. * Petr Nedoma, Jiří Kadlec, Jan Schier: Tools for Implementation of Parallel Algorithms for Adaptive Control and Signal Processing. 4th IFAC International Symposium on Adaptive Systems in Control and Signal Processing. ACASP '92, 727-730. Laboratoire d'Automatique, Grenoble 1992.
42. * Jan Schier: A Parallel Algorithm for Estimation of the System Structure. Binary Control '92, -. Czech Technical University, Prague 1992.

Other publications (30)
2. * Jan Schier, Bohumil Kovář, Michal Kuneš, E. Kočárek, P. Tesner, P. Zemčík, M. Dubská, P. Honec, P. Číp: GenEx: nízkonákladový systém pro hodnocení chromozomových aneuploidií v nízkofrekvenčních mozaikách. Genetická konference GSGM 2014, 83-83. -, Praha 2014.   Download
3. * Jan Schier, Bohumil Kovář, Michal Kuneš, P. Honec, P. Číp, P. Zemčík, M. Dubská, E. Kočárek, P. Tesner: An inexpensive system for quantitative analysis of mosaic form of Turner/Klinefelter syndrome. 18th International Microscopy Congress Proceedings. Czechoslovak Microscopy Society, Prague 2014.   Download
4. * Jan Schier, Bohumil Kovář, Michal Kuneš: GenEx Software library for object detection in genetical analysis evaluation: User manual. Technical Report . ÚTIA AV ČR, Praha 2014.   Download
5. * Bohumil Kovář, Jan Schier, Michal Kuneš: GenExLib C/C++ knihovna, Referenční příručka. Technical Report . ÚTIA AV ČR, Praha 2014.   Download
7. * Michal Kuneš, Jan Schier, Bohumil Kovář: Signal Selection Tool. Technical reports . ÚTIA AV ČR, v.v.i, Praha 2012.   Download
8. * Jiří Kadlec, Martin Daněk, Jan Schier, Lukáš Kohout, Leoš Kafka, Jan Kloub, Jaroslav Stejskal, Jiří Svozil: Identifikace limitací dosavadních technologií v kontextu projektu VLAM. Research Report 2183. ÚTIA AV ČR, Praha 2007.
9. * Jan Schier, Bohumil Kovář, P. Zemčík, A. Herout, J. Zuzaňák: Configuration System for a DSP/FPGA-Based Embedded Accelerator. Digital Technologies 2007 Book of Abstracts, 32-33. Slovenská elektrotechnická spoločnosť, Žilina 2007.
10. * Bohumil Kovář, Jan Schier: Kompresní algoritmy a jejich implementace. Research Report 2191. ÚTIA AV ČR, Praha 2007.
11. * Jan Schier, Bohumil Kovář: A DSP/FPGA-based accelerator for video processing. Digital Technologies 2006 Book of Abstracts, 13-13. Slovenská elektrotechnická spoločnosť, Žilina 2006.
12. * P. Šůcha, Antonín Heřmánek, Jan Schier, Z. Hanzálek: Optimization of Finite Interval CMA Implementation for FPGA. Research Report 2127. ÚTIA AV ČR, Praha 2005.
13. * Jan Schier: QR-RLS - Celoxica RC1000 Demo. (Program). ÚTIA AV ČR, Praha 2003.
14. * Miroslav Líčko, Jan Schier, Zdeněk Pohl, Jiří Kadlec, Milan Tichý, Rudolf Matoušek, Antonín Heřmánek: Logarithmic Arithmetic for Real Data Types and Support for MATLAB/SIMULINK Based Rapid-FPGA-Prototyping. Research Report 2069. ÚTIA AV ČR, Praha 2002.
15. * Jan Schier, Jiří Kadlec, M. Moonen: Implementing Advanced Equalization Algorithms using Simulink with Embedded Alpha AXP Coprocessor. Research Report 2013. ÚTIA AV ČR, Praha 2001.
16. * Jan Schier, A. J. C. van Gemund: PTT and OTT Enhancement: Part 2. Final Report. Technical University, Delft 1998.
17. * Jiří Kadlec, Jan Schier: HSLA DSP Package. Research Report 1924. ÚTIA AV ČR, Praha 1998.
18. * Jiří Kadlec, Jan Schier: Results of the Global Probability Analysis Approach. Research Report 1926. ÚTIA AV ČR, Praha 1998.
19. * Jiří Kadlec, Jan Schier: HSLA 3D Monitor Package. Research Report 1925. ÚTIA AV ČR, Praha 1998.
20. * Jiří Kadlec, Jan Schier: Numerical Analysis of a Normalized QR Filter Using Probability Description of Propagated Data. Research Report 1923. ÚTIA AV ČR, Praha 1998.
21. * Jan Schier, A. J. C. van Gemund: PTT and OTT Enhancement - Final Report. University of Technology, Delft 1996.
22. * Jan Schier, H. X. Lin, A. J. C. van Gemund: Colorado System: Peak Tracking and Tracing Algorithm and its Parallel Implementation. Technische Universiteit, Delft 1995.
23. * Jan Schier: A Systolic Algorithm for the Block-Regularised RLS Identification. Research Report 1807. ÚTIA AV ČR, Praha 1994.
24. * F. M. F. Gaston, Jiří Kadlec, Jan Schier: The Block Regularised Linear Quadratic Optimal Controller. Research Report 1789. ÚTIA AV ČR, Praha 1994.
25. * Jan Schier: Systolic Algorithms for Adaptive Control, Implementation in the Matlab Environment. Research Report 1808. ÚTIA AV ČR, Praha 1994.
27. * Jan Schier: The Systolic Regularized Linear Quadratic Controller. Research Report 1815. ÚTIA AV ČR, Praha 1994.
28. * Jan Schier: A systolic algorithm for the block-regularized RLS identification. Abstract. Algorithms and Parallel VLSI Architectures. Abstracts, -. Katholieke Universiteit, Leuven 1994.

Miscellaneous (6)
1. * Jan Schier, M. F. Secca, G. Plantier, T. Schultz, A. Fred, H. Gamboa: BIOIMAGING 2014, 1st International Conference on Bioimaging.   Download
2. * M. Forjaz Secca, Jan Schier, G. Plantier, T. Schultz, A. Fred, H. Gamboa: BIOIMAGING 2014 Proceedings of the International Conference on Bioimaging. SCITEPRESS – Science and Technology Publications, Lisabon 2014.
3. * Jan Schier, C. Correia, A. Fred, H. Gamboa: BIOINFORMATICS 2012, Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress – Science and Technology Publications, Algarve 2012.
4. * Jan Schier, C. M. B. A. Correia, A. L. N. Fred, H. Gamboa: BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress, Vilamoura, Algarve 2012.
6. * Bohumil Kovář, Jan Schier: Kompresní algoritmy a jejich implementace. 2007.